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1

CRISPR/Cas9 in plants: at play in the genome and at work for crop improvement

Hussain, Babar, Lucas, Stuart James, Budak, Hikmet

Journal:

Briefings in Functional Genomics

Year:

2018

Language:

english

File:

PDF, 587 KB

english, 2018

2

Genome-wide profiling and analysis ofFestuca arundinaceamiRNAs and transcriptomes in response to foliar glyphosate application

Turgay Unver, Mine Bakar, Robert C. Shearman, Hikmet Budak

Journal:

Molecular Genetics and Genomics

Year:

2010

Language:

english

File:

PDF, 503 KB

english, 2010

3

Identifying, cloning and structural analysis of differentially expressed genes upon Puccinia infection of Festuca rubra var. rubra

Neslihan Z. Ergen, Gizem Dinler, Robert C. Shearman, Hikmet Budak

Journal:

Year:

2007

Language:

english

File:

PDF, 922 KB

english, 2007

4

Proteome changes in wild and modern wheat leaves upon drought stress by two-dimensional electrophoresis and nanoLC-ESI–MS/MS

Hikmet Budak, Bala Ani Akpinar, Turgay Unver, Mine Turktas

Journal:

Plant Molecular Biology

Year:

2013

Language:

english

File:

PDF, 506 KB

english, 2013

5

Exploring the interaction between small RNAs and R genes during Brachypodium response to Fusarium culmorum infection

Lucas, Stuart James, Baştaş, Kubilay, Budak, Hikmet

Journal:

Year:

2014

Language:

english

File:

PDF, 906 KB

english, 2014

6

Stress responsive miRNAs and isomiRs in cereals

Budak, Hikmet, Kantar, Melda, Bulut, Reyyan, Akpinar, Bala Ani

Journal:

Year:

2015

Language:

english

File:

PDF, 354 KB

english, 2015

7

Dual-Excitation Upconverting Nanoparticle and Quantum Dot Aptasensor for Multiplexed Food Pathogen Detection

Kurt, Hasan, Yüce, Meral, Hussain, Babar, Budak, Hikmet

Journal:

Biosensors and Bioelectronics

Year:

2016

Language:

english

File:

PDF, 861 KB

english, 2016

8

CRISPR/Cas9 genome editing in wheat

Kim, Dongjin, Alptekin, Burcu, Budak, Hikmet

Journal:

Functional & Integrative Genomics

Year:

2017

Language:

english

File:

PDF, 1.64 MB

english, 2017

9

[Methods in Molecular Biology] Brachypodium Genomics Volume 1667 ||

Sablok, Gaurav, Budak, Hikmet, Ralph, Peter J.

Year:

2018

Language:

english

File:

PDF, 8.36 MB

english, 2018

10

[Methods in Molecular Biology] Brachypodium Genomics Volume 1667 || Whole Genome DNA Methylation Analysis Using Next-Generation Sequencing (BS-seq)

Sablok, Gaurav, Budak, Hikmet, Ralph, Peter J.

Year:

2018

Language:

english

File:

PDF, 2.34 MB

english, 2018

11

[Methods in Molecular Biology] Brachypodium Genomics Volume 1667 || Transcriptional and Posttranscriptional Regulation of Drought Stress Treatments in Brachypodium Leaves

Sablok, Gaurav, Budak, Hikmet, Ralph, Peter J.

Year:

2018

Language:

english

File:

PDF, 269 KB

english, 2018

12

[Methods in Molecular Biology] Brachypodium Genomics Volume 1667 || Evaluation of Genome-Wide Markers and Orthologous Markers in Brachypodium distachyon

Sablok, Gaurav, Budak, Hikmet, Ralph, Peter J.

Year:

2018

Language:

english

File:

PDF, 272 KB

english, 2018

13

[Methods in Molecular Biology] Brachypodium Genomics Volume 1667 || Methods for Cytogenetic Chromosome Barcoding and Chromosome Painting in Brachypodium distachyon and Its Relative Species

Sablok, Gaurav, Budak, Hikmet, Ralph, Peter J.

Year:

2018

Language:

english

File:

PDF, 257 KB

english, 2018

14

[Methods in Molecular Biology] Brachypodium Genomics Volume 1667 || Molecular Markers in Whole Genome Evolution of Brachypodium

Sablok, Gaurav, Budak, Hikmet, Ralph, Peter J.

Year:

2018

Language:

english

File:

PDF, 248 KB

english, 2018

15

[Methods in Molecular Biology] Brachypodium Genomics Volume 1667 || Brachypodium distachyon Long Noncoding RNAs: Genome-Wide Identification and Expression Analysis

Sablok, Gaurav, Budak, Hikmet, Ralph, Peter J.

Year:

2018

Language:

english

File:

PDF, 363 KB

english, 2018

16

Correction to: A large-scale multiomics analysis of wheat stem solidness and the wheat stem sawfly feeding response, and syntenic associations in barley, Brachypodium, and rice

Biyiklioglu, Sezgi, Alptekin, Burcu, Ani Akpinar, B., Varella, Andrea C., Hofland, Megan L., Weaver, David K., Bothner, Brian, Budak, Hikmet

Journal:

Functional & Integrative Genomics

Year:

2018

Language:

english

File:

PDF, 288 KB

english, 2018

17

Data quality of whole genome bisulfite sequencing on Illumina platforms

Raine, Amanda, Liljedahl, Ulrika, Nordlund, Jessica, Budak, Hikmet

Journal:

Year:

2018

Language:

english

File:

PDF, 5.42 MB

english, 2018

18

Strategic tillage may sustain the benefits of long-term no-till in a Vertisol under Mediterranean climate

Çelik, İsmail, Günal, Hikmet, Acar, Mert, Acir, Nurullah, Bereket Barut, Zeliha, Budak, Mesut

Journal:

Soil and Tillage Research

Year:

2019

Language:

english

File:

PDF, 1.98 MB

english, 2019

19

Hotspots in the genomic architecture of field drought responses in wheat as breeding targets

Gálvez, Sergio, Mérida-García, Rosa, Camino, Carlos, Borrill, Philippa, Abrouk, Michael, Ramírez-González, Ricardo H., Biyiklioglu, Sezgi, Amil-Ruiz, Francisco, Dorado, Gabriel, Budak, Hikmet, Gonzale

Journal:

Functional & Integrative Genomics

Year:

2018

Language:

english

File:

PDF, 2.55 MB

english, 2018

20

Editorial: Use of Barley and Wheat Reference Sequences: Downstream Applications in Breeding, Gene Isolation, GWAS, and Evolution

Perovic, Dragan, Budak, Hikmet, Sato, Kazuhiro, Sourdille, Pierre

Journal:

Frontiers in Plant Science

Year:

2020

File:

PDF, 214 KB

2020

21

Synthesis and structure–antibacterial activity relationship investigation of isomeric 2,3,5-substituted perhydropyrrolo[3,4-d]isoxazole-4,6-diones

Hikmet Agirbas, Selahaddin Guner, Fatma Budak, Sema Keceli, Fatma Kandemirli, Nathaly Shvets, Vasyl Kovalishyn, Anatholy Dimoglo

Journal:

Bioorganic & Medicinal Chemistry

Year:

2007

Language:

english

File:

PDF, 413 KB

english, 2007

22

Synthesis and structure–antibacterial activity relationship studies of 4-substituted phenyl-4,5-dihydrobenzo[f][1,4]oxazepin-3(2H)-thiones

Hikmet Agirbas, Berat Kemal, Fatma Budak

Journal:

Medicinal Chemistry Research

Year:

2011

Language:

english

File:

PDF, 1.70 MB

english, 2011

23

Quantitative trait loci conferring grain mineral nutrient concentrations in durum wheat

Zvi Peleg, Ismail Cakmak, Levent Ozturk, Atilla Yazici, Yan Jun, Hikmet Budak, Abraham B. Korol, Tzion Fahima, Yehoshua Saranga

Journal:

Theoretical and Applied Genetics

Year:

2009

Language:

english

File:

PDF, 496 KB

english, 2009

24

Conserved microRNAs and their targets in model grass speciesBrachypodium distachyon

Turgay Unver, Hikmet Budak

Journal:

Year:

2009

Language:

english

File:

PDF, 747 KB

english, 2009

25

miRNA expression patterns ofTriticum dicoccoidesin response to shock drought stress

Melda Kantar, Stuart J. Lucas, Hikmet Budak

Journal:

Year:

2011

Language:

english

File:

PDF, 960 KB

english, 2011

26

Transcriptome pathways unique to dehydration tolerant relatives of modern wheat

Neslihan Z. Ergen, Jyothi Thimmapuram, Hans J. Bohnert, Hikmet Budak

Journal:

Functional & Integrative Genomics

Year:

2009

Language:

english

File:

PDF, 1.44 MB

english, 2009

27

Regulation of barley miRNAs upon dehydration stress correlated with target gene expression

Melda Kantar, Turgay Unver, Hikmet Budak

Journal:

Functional & Integrative Genomics

Year:

2010

Language:

english

File:

PDF, 723 KB

english, 2010

28

Analysis of Expressed Sequence Tags (ESTs) fromAgrostisSpecies Obtained Using Sequence Related Amplified Polymorphism

Gizem Dinler, Hikmet Budak

Journal:

Biochemical Genetics

Year:

2008

Language:

english

File:

PDF, 322 KB

english, 2008

29

Genetic variation and environmental stability of grain mineral nutrient concentrations inTriticum dicoccoidesunder five environments

Hugo Ferney Gomez-Becerra, Atilla Yazici, Levent Ozturk, Hikmet Budak, Zvi Peleg, Alexey Morgounov, Tzion Fahima, Yehoshua Saranga, Ismail Cakmak

Journal:

Year:

2010

Language:

english

File:

PDF, 351 KB

english, 2010

30

Expression and Cellular Localization ofZIP1Transporter Under Zinc Deficiency in Wild Emmer Wheat

Emel Durmaz, Ceyda Coruh, Gizem Dinler, Micheal A. Grusak, Zvika Peleg, Yashua Saranga, Tzion Fahima, Atilla Yazici, Levent Ozturk, Ismail Cakmak, Hikmet Budak

Journal:

Plant Molecular Biology Reporter

Year:

2011

Language:

english

File:

PDF, 547 KB

english, 2011

31

The drought response displayed by a DRE-binding protein from Triticum dicoccoides

Stuart Lucas, Emel Durmaz, Bala Anı Akpınar, Hikmet Budak

Journal:

Plant Physiology and Biochemistry

Year:

2011

Language:

english

File:

PDF, 1.14 MB

english, 2011

32

Sequencing over 13 000 expressed sequence tags from six subtractive cDNA libraries of wild and modern wheats following slow drought stress

NESLIHAN Z. ERGEN, HIKMET BUDAK

Journal:

Plant, Cell & Environment

Year:

2009

Language:

english

File:

PDF, 464 KB

english, 2009

33

Multiple QTL-effects of wheat Gpc-B1 locus on grain protein and micronutrient concentrations

Assaf Distelfeld, Ismail Cakmak, Zvi Peleg, Levent Ozturk, Atilla M. Yazici, Hikmet Budak, Yehoshua Saranga, Tzion Fahima

Journal:

Physiologia Plantarum

Year:

2007

Language:

english

File:

PDF, 144 KB

english, 2007

34

The effect of introgressions of wheat D-genome chromosomes into 'Presto' triticale

Hikmet Budak, P. Stephen Baenziger, Brian S. Beecher, Robert A. Graybosch, Benjamin T. Campbell, Marry J. Shipman, Mustafa Erayman, Kent M. Eskridge

Journal:

Year:

2004

Language:

english

File:

PDF, 213 KB

english, 2004

35

Molecular characterization of cDNA encoding resistance gene-like sequences inBuchloe dactyloides

Hikmet Budak, Zeynep Kasap, Robert C. Shearman, Ismail Dweikat, Ugur Sezerman, Abid Mahmood

Journal:

Molecular Biotechnology

Year:

2006

Language:

english

File:

PDF, 447 KB

english, 2006

36

Development of SSR markers and analysis of diversity in Turkish populations ofBrachypodium distachyon

John P Vogel, Metin Tuna, Hikmet Budak, Naxin Huo, Yong Q Gu, Michael A Steinwand

Journal:

BMC Plant Biology

Year:

2009

Language:

english

File:

PDF, 458 KB

english, 2009

37

Autophagy-related gene,TdAtg8, in wild emmer wheat plays a role in drought and osmotic stress response

Duygu Kuzuoglu-Ozturk, Ozge Cebeci Yalcinkaya, Bala Ani Akpinar, Geraldine Mitou, Gozde Korkmaz, Devrim Gozuacik, Hikmet Budak

Journal:

Year:

2012

Language:

english

File:

PDF, 676 KB

english, 2012

38

Functional features of a single chromosome arm in wheat (1AL) determined from its structure

Stuart J. Lucas, Hana Šimková, Jan Šafář, Irena Jurman, Federica Cattonaro, Sonia Vautrin, Arnaud Bellec, Hélène Berges, Jaroslav Doležel, Hikmet Budak

Journal:

Functional & Integrative Genomics

Year:

2012

Language:

english

File:

PDF, 304 KB

english, 2012

39

Transferability and polymorphism of barley EST-SSR markers used for phylogenetic analysis inHordeum chilense

Almudena Castillo, Hikmet Budak, Rajeev K Varshney, Gabriel Dorado, Andreas Graner, Pilar Hernandez

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 491 KB

english, 2008

40

TMPIT1 from wild emmer wheat: First characterisation of a stress-inducible integral membrane protein

Stuart Lucas, Esen Dogan, Hikmet Budak

Journal:

Year:

2011

Language:

english

File:

PDF, 1.54 MB

english, 2011

41

Effects of long-term organic and mineral fertilizers on bulk density and penetration resistance in semi-arid Mediterranean soil conditions

Ismail Celik, Hikmet Gunal, Mesut Budak, Cagdas Akpinar

Journal:

Year:

2010

Language:

english

File:

PDF, 695 KB

english, 2010

42

Evaluation of seedling characteristics of wheat ( Triticum aestivum L.) through canonical correlation analysis

Erayman, Mustafa, Abeyo, Bekele, Baenziger, P., Budak, Hikmet, Eskridge, Kent

Journal:

Cereal Research Communications

Year:

2006

File:

PDF, 1.30 MB

2006

43

In Planta Evidence for the Involvement of a Ubiquitin Conjugating Enzyme (UBC E2 clade) in Negative Regulation of Disease Resistance

Unver, Turgay, Turktas, Mine, Budak, Hikmet

Journal:

Plant Molecular Biology Reporter

Year:

2013

Language:

english

File:

PDF, 2.44 MB

english, 2013

44

Subgenomic analysis of microRNAs in polyploid wheat

Melda Kantar, Bala Anı Akpınar, Miroslav Valárik, Stuart J. Lucas, Jaroslav Doležel, Pilar Hernández, Hikmet Budak

Journal:

Functional & Integrative Genomics

Year:

2012

Language:

english

File:

PDF, 574 KB

english, 2012

45

New wheat microRNA using whole-genome sequence

Kurtoglu, Kuaybe Yucebilgili, Kantar, Melda, Budak, Hikmet

Journal:

Functional & Integrative Genomics

Year:

2014

Language:

english

File:

PDF, 935 KB

english, 2014

46

Wheat syntenome unveils new evidences of contrasted evolutionary plasticity between paleo- and neoduplicated subgenomes

Pont, Caroline, Murat, Florent, Guizard, Sébastien, Flores, Raphael, Foucrier, Séverine, Bidet, Yannick, Quraishi, Umar Masood, Alaux, Michael, Doležel, Jaroslav, Fahima, Tzion, Budak, Hikmet, Keller,

Journal:

The Plant Journal

Year:

2013

Language:

english

File:

PDF, 1.08 MB

english, 2013

47

Dehydration Stress-Responsive miRNA in Brachypodium distachyon : Evident by Genome-Wide Screening of microRNAs Expression

Budak, Hikmet, Akpinar, Ani

Journal:

Omics A Journal of Integrative Biology

Year:

2011

Language:

english

File:

PDF, 1.19 MB

english, 2011

48

Employment of nanomaterials in polymerase chain reaction: insight into the impacts and putative operating mechanisms of nano-additives in PCR

Yuce, Meral, Kurt, Hasan, Mokkapati, Venkata R. S. S., Budak, Hikmet

Journal:

Year:

2014

Language:

english

File:

PDF, 723 KB

english, 2014

49

Evolution of Buchloë dactyloides based on cloning and sequencing of matK , rbcL , and cob genes from plastid and mitochondrial genomes

Budak, Hikmet, Shearman, Robert C, Dweikat, Ismail

Journal:

Year:

2005

File:

PDF, 93 KB

2005

50

Sequencing chromosome 5D of Aegilops tauschii and comparison with its allopolyploid descendant bread wheat ( Triticum aestivum )

Akpinar, Bala A., Lucas, Stuart J., Vrána, Jan, Doležel, Jaroslav, Budak, Hikmet

Journal:

Plant Biotechnology Journal

Year:

2015

Language:

english

File:

PDF, 1.45 MB

english, 2015